ome changes to the Dockerfile the script , the template and the

# Base R image

FROM rocker/r-ver:latest

FROM rocker/verse:latest

RUN apt update && apt install -y cron \

RUN apt update && apt install -y cron vim \

    && apt-get clean

# Make a directory in the container

RUN mkdir /home/r-environment

# Install R dependencies

RUN R -e "install.packages(c('dplyr','httr', 'leaflet', 'htmlwidgets', 'lubridate','jsonlite'))"

RUN R -e "install.packages(c('dplyr','httr', 'leaflet', 'htmlwidgets', 'lubridate','jsonlite','htmlTable', 'rmarkdown', 'flexdashboard','kableExtra','knitr'))"

# Create a stub for our R script to the container

# Create a stub for our R script and Rmd file to the container

RUN touch /home/r-environment/script.R

RUN touch /home/r-environment/template.Rmd

# Copy the script.sh file to the container

COPY script.sh /home/r-environment/script.sh

# Make the script executable

#!/bin/bash

# Define paths

SCRIPT_DIR="/home/r-environment"

LOG_DIR="${SCRIPT_DIR}/logs"

DATA_DIR="${SCRIPT_DIR}/downloads"

DASH_DIR="${SCRIPT_DIR}/dashboard"

# Create necessary directories if they don't exist

mkdir -p $LOG_DIR

mkdir -p $DATA_DIR

mkdir -p $DASH_DIR

# Export PATH

export PATH=/usr/local/bin:/usr/local/sbin:/usr/bin:/sbin:/bin:/usr/sbin

cd /home/r-environment/

/usr/local/bin/Rscript /home/r-environment/script.R >> /home/r-environment/logs/cron.log 2>&1

# Change to the script directory

cd $SCRIPT_DIR

# Run the R script to download data

/usr/local/bin/Rscript $SCRIPT_DIR/script.R >> $SCRIPT_DIR/logs/cron.log 2>&1

# Render the R Markdown file

/usr/local/bin/Rscript -e "rmarkdown::render('${SCRIPT_DIR}/template.Rmd', output_file='${DASH_DIR}/dashboard.html')" >> ${LOG_DIR}/cron_rmarkdown.log 2>&1

---

title: "Untitled"

output: 

  flexdashboard::flex_dashboard:

    orientation: columns

    vertical_layout: fill

---

```{r setup, include=FALSE}

#TODO: Adjust correctly for the docker container

subfolder = "01_data/raw"

library("flexdashboard")

library("leaflet")

library("htmlwidgets")

library("lubridate")

library("jsonlite")

library("dplyr")

library("knitr")

library("kableExtra")

```

Column {data-width=500}

-----------------------------------------------------------------------

### Chart A

```{r}

# Here goes the code for the leaflet

```

Column {data-width=500}

-----------------------------------------------------------------------

### Table A

```{r}

# Here goes the code for the table

```

      context: ./02_code/docker

      dockerfile: Dockerfile

    volumes:

      # This is the R script file

      # This is the R Download script file

      # TODO: change the placeholder <NAME OF YOUR SCRIPT>

      - "./02_code/R/<NAME OF YOUR SCRIPT>:/home/r-environment/script.R:rw"

      # This is the cron file

      # TODO: Change the content of the file to run every day

      - "./02_code/cron_file/my-crontab:/etc/cron.d/my-crontab:rw"

      # # This is the Rmd file that create the dashboard

      # # TODO TASK4: change the placeholder <NAME OF YOUR Rmd>

      # - "./04_dashboard/<NAME OF YOUR Rmd>:/home/r-environment/template.Rmd:rw"

      # This is the shell script that starts the R script

      - "./02_code/docker/script.sh:/home/r-environment/script.sh:rw"

      # This is the download folder where all the downloaded data go

      - "./01_data/downloads/:/home/r-environment/downloads/:rw"

      # # This is the dashboard folder

      # # TODO TASK4

      # - "./01_data/dashboard/:/home/r-environment/dashboard/:rw"

      # This is the logs folder

      - "./01_data/logs/:/home/r-environment/logs/:rw"

  #  TODO TASK4   

  # nginx:

  #   image: nginx:latest

  #   ports:

  #     - "80:80"

  #   volumes:

  #     - "./01_data/dashboard/:/usr/share/nginx/html/:rw"

  #   depends_on:

  #     - rscript

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